Index

_

__init__() (anyvlm.anyvar.http_client.HttpAnyVarClient method) (anyvlm.anyvar.python_client.PythonAnyVarClient method) (anyvlm.storage.base_storage.Storage method) (anyvlm.storage.orm.AlleleFrequencyData method) (anyvlm.storage.orm.Base method) (anyvlm.storage.postgres.PostgresObjectStore method)

A

ac (anyvlm.storage.orm.AlleleFrequencyData attribute) ac_hemi (anyvlm.storage.orm.AlleleFrequencyData attribute) ac_het (anyvlm.storage.orm.AlleleFrequencyData attribute) ac_hom (anyvlm.storage.orm.AlleleFrequencyData attribute) add_allele_frequencies() (anyvlm.storage.base_storage.Storage method) (anyvlm.storage.postgres.PostgresObjectStore method) AlleleFrequencyData (class in anyvlm.storage.orm) AlleleFrequencyMapper (class in anyvlm.storage.mappers) an (anyvlm.storage.orm.AlleleFrequencyData attribute) anyvlm.anyvar.http_client module anyvlm.anyvar.python_client module

anyvlm.main module anyvlm.storage.base_storage module anyvlm.storage.mapper_registry module anyvlm.storage.mappers module anyvlm.storage.orm module anyvlm.storage.postgres module

B

Base (class in anyvlm.storage.orm)

BaseMapper (class in anyvlm.storage.mappers)

C

close() (anyvlm.anyvar.http_client.HttpAnyVarClient method) (anyvlm.anyvar.python_client.PythonAnyVarClient method) (anyvlm.storage.base_storage.Storage method) (anyvlm.storage.postgres.PostgresObjectStore method)

cohort (anyvlm.storage.orm.AlleleFrequencyData attribute) create_anyvar_client() (in module anyvlm.main) create_anyvlm_storage() (in module anyvlm.main) create_tables() (in module anyvlm.storage.orm)

F

filter (anyvlm.storage.orm.AlleleFrequencyData attribute) from_db_entity() (anyvlm.storage.mapper_registry.MapperRegistry method) (anyvlm.storage.mappers.AlleleFrequencyMapper method) (anyvlm.storage.mappers.BaseMapper method)

G

get_caf_by_vrs_allele_id() (anyvlm.storage.base_storage.Storage method) (anyvlm.storage.postgres.PostgresObjectStore method)

get_mapper() (anyvlm.storage.mapper_registry.MapperRegistry method) get_registered_allele() (anyvlm.anyvar.http_client.HttpAnyVarClient method) (anyvlm.anyvar.python_client.PythonAnyVarClient method)

H

HttpAnyVarClient (class in anyvlm.anyvar.http_client)

L

lifespan() (in module anyvlm.main)

M

MapperRegistry (class in anyvlm.storage.mapper_registry) MAX_ROWS (anyvlm.storage.postgres.PostgresObjectStore attribute) module anyvlm.anyvar.http_client anyvlm.anyvar.python_client anyvlm.main anyvlm.storage.base_storage anyvlm.storage.mapper_registry anyvlm.storage.mappers anyvlm.storage.orm anyvlm.storage.postgres

P

PostgresObjectStore (class in anyvlm.storage.postgres) put_allele_expressions() (anyvlm.anyvar.http_client.HttpAnyVarClient method) (anyvlm.anyvar.python_client.PythonAnyVarClient method)

PythonAnyVarClient (class in anyvlm.anyvar.python_client)

R

registry (anyvlm.storage.orm.Base attribute)

S

sanitized_url (anyvlm.storage.base_storage.Storage property) (anyvlm.storage.postgres.PostgresObjectStore property) service_info() (in module anyvlm.main)

session_factory() (in module anyvlm.storage.orm) Storage (class in anyvlm.storage.base_storage) StorageError

T

to_db_entity() (anyvlm.storage.mapper_registry.MapperRegistry method) (anyvlm.storage.mappers.AlleleFrequencyMapper method) (anyvlm.storage.mappers.BaseMapper method)

to_dict() (anyvlm.storage.orm.Base method)

V

va_model_to_db_mapping (anyvlm.storage.mapper_registry.MapperRegistry attribute)

validation_exception_handler() (in module anyvlm.main) vrs_id (anyvlm.storage.orm.AlleleFrequencyData attribute)

W

wipe_db() (anyvlm.storage.base_storage.Storage method) (anyvlm.storage.postgres.PostgresObjectStore method)